APA

This module enables users to explore the landscape across tissues, differential between AD stages, and protein coding gene expression correlation of APA events. Users can query APA event by protein coding gene name, Ensembl gene ID, and genomic location.

Query

Select algorithm:

Select annotation:

Select dataset and tissues:

MSBB dataset

Anterior Prefrontal Cortex (BM10) Superior Temporal Gyrus (BM22) Parahippocampal Gyrus (BM36) Inferior Frontal Gyrus (BM44)

Mayo dataset

Temporal Cortex (TCX) Cerebellum (CBE)

Query gene ID:

Example: VDAC2, ENSG00000165637

Or search genomic region:

Example: chr10:75200000-75300000

Output

eRNAs

Gene	Ensembl Gene Id	Chr	Start	End	Strand	Details

Gene	Ensembl gene ID	Rs	FDR